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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19923857_19923974_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19923857 - 19923974
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
TGCCTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCGGAG
U12 Branch Point Sequence:
TCGTGCGGAGCC
Flanking Amino Acid:
PGTCRQPAAHRTGGGSRGAE
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
60.5
41.4
Major BPS
41
-0.5
1.7
36.8
44.4
Major PPT
74.5
0.55
0.8
68.4
32
Minor 5ss
37
-1.5
2.9
48.1
41.3
Minor BPS
38.6
-0.8
2.4
50.56
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020120
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039348
19923297 - 19924320
1024