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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19972673_19979907_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19972673 - 19979907
Intron Length:
7235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTTTCTCATTA
Flanking Amino Acid:
LPKDSKIIQQDDSSGSLASI
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
81.9
0.72
0.8
83.2
26.9
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
59.7
0.3
1.8
75.01
37

Associated Gene:

Gene:
TBC1D12
Ensembl Gene ID:
ENSAPLG00000012124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034207
19957915 - 19999663
41749