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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19972673_19985101_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19972673 - 19985101
Intron Length:
12429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TAATGTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTTATTAATA
Flanking Amino Acid:
LPKDSKIIQQEYEARTGRMC
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
69.1
0.43
1
67
43.6
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
69.8
0.62
1.5
78.59
31.1

Associated Gene:

Gene:
TBC1D12
Ensembl Gene ID:
ENSAPLG00000012124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012634
19957915 - 19999663
41749