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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19987384_19989918_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19987384 - 19989918
Intron Length:
2535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGCTTCACA
Flanking Amino Acid:
DEMVAEAKKREIKEAHKRKK
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.2
0.79
0.8
80
32.1
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
65.3
0.48
2.2
83.03
38.2

Associated Gene:

Gene:
TBC1D12
Ensembl Gene ID:
ENSAPLG00000012124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034207
19957915 - 19999663
41749
ENSAPLT00000012634
19957915 - 19999663
41749