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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19990463_19991054_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19990463 - 19991054
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGCCTT
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TTTTCCTTACTT
Flanking Amino Acid:
AVGNELNITPELYEIFLSRA
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
67.1
43.8
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
85.6
0.8
0.7
81.6
30.5
Minor 5ss
50.2
0.01
2.8
70.5
41.1
Minor BPS
81.2
1.06
1.5
95.75
31

Associated Gene:

Gene:
TBC1D12
Ensembl Gene ID:
ENSAPLG00000012124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012634
19957915 - 19999663
41749
ENSAPLT00000034207
19957915 - 19999663
41749