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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1999458_2017777_R

Intron Information:

Intron Rank:
143217
Intron Class:
major
Intron Phase:
Intron Coordinates:
1999458 - 2017777
Intron Length:
18320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAT
5'SS Class:
strong_major
3'SS Sequence:
AGTTTGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TTTTAGTCAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73
38.2
Major BPS
67.7
0.44
1
58
38.9
Major PPT
79.2
0.66
1
69.7
45.4
Minor 5ss
29.5
-2.3
3.8
45.4
49.7
Minor BPS
46.7
-0.1
2.6
77.18
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041583
1996806 - 2025480
28675