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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19996440_19998160_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19996440 - 19998160
Intron Length:
1721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAATT
Flanking Amino Acid:
SLTPDIYLIDWIFTLYSKSL
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
76.3
0.59
0.8
71
33.4
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
76.7
0.92
1.4
91.82
31

Associated Gene:

Gene:
TBC1D12
Ensembl Gene ID:
ENSAPLG00000012124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034207
19957915 - 19999663
41749
ENSAPLT00000012634
19957915 - 19999663
41749