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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20002191_20002589_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20002191 - 20002589
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTTTGTTCA
5'SS Class:
weak_major
3'SS Sequence:
ATCTCTGAAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
CATCTCTGAAAT
Flanking Amino Acid:
EEYKKKHVGKSEKREEEEDD
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.3
0.1
1.3
55.4
38.1
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
59.2
0.21
1
55.3
38.7
Minor 5ss
44.9
-0.5
2.4
52.5
44.1
Minor BPS
53.4
0.19
1.6
68.83
41.3

Associated Gene:

Gene:
NOC3L
Ensembl Gene ID:
ENSAPLG00000012432
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012978
19999737 - 20015261
15525