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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20005839_20006542_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20005839 - 20006542
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTAAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTTAAAT
Flanking Amino Acid:
SAILSDPDNNIKKLKELRAM
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
69.1
41.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79
0.65
1
80
36.4
Minor 5ss
37.1
-1.5
3.1
49.4
40.3
Minor BPS
73.3
0.81
1.3
84.29
36.6

Associated Gene:

Gene:
NOC3L
Ensembl Gene ID:
ENSAPLG00000012432
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012978
19999737 - 20015261
15525