About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20007463_20007673_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20007463 - 20007673
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTCG
5'SS Class:
major
3'SS Sequence:
TTGTTTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AATTACTAAAAA
Flanking Amino Acid:
YLENLEQTIKDWKQRKLKKS
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
57.5
42.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
83.9
0.76
0.9
80.6
37
Minor 5ss
35.3
-1.7
3.5
47.7
48
Minor BPS
51.2
0.04
1.9
65.72
39.9

Associated Gene:

Gene:
NOC3L
Ensembl Gene ID:
ENSAPLG00000012432
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012978
19999737 - 20015261
15525