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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20007850_20008055_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20007850 - 20008055
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTGACCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTGACTTAATA
Flanking Amino Acid:
VPLMNDTSKTISELCCEAVQ
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
81.8
31.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
75.8
0.58
0.9
70.8
40.1
Minor 5ss
34.8
-1.7
3.3
49.9
46.4
Minor BPS
70.8
0.65
1.6
80.21
35.9

Associated Gene:

Gene:
NOC3L
Ensembl Gene ID:
ENSAPLG00000012432
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012978
19999737 - 20015261
15525