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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20009223_20009515_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20009223 - 20009515
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGACTA
Flanking Amino Acid:
SESKEKKLKLHTETLNVVFL
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
100
1.24
0.5
100
0
Major PPT
87.5
0.84
0.6
85.4
22
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
53.5
0.11
2
73.52
38.3

Associated Gene:

Gene:
NOC3L
Ensembl Gene ID:
ENSAPLG00000012432
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012978
19999737 - 20015261
15525