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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20010428_20011316_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20010428 - 20011316
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TGATTATTCACT
Flanking Amino Acid:
LVKTLFSLHAGTTNDDIKIV
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1.1
71.6
40.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
82.7
0.74
0.9
80.2
37.3
Minor 5ss
40
-1.1
2.8
51.5
44.9
Minor BPS
52.2
0.15
2
74.56
41.8

Associated Gene:

Gene:
NOC3L
Ensembl Gene ID:
ENSAPLG00000012432
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012978
19999737 - 20015261
15525