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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20012603_20013440_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20012603 - 20013440
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTGCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TGGAAATTGATT
Flanking Amino Acid:
SRALPLDLSRRPATELFEAY
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.1
30.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
72
0.5
0.9
65.8
40.7
Minor 5ss
40.1
-1.1
3.1
55
49.2
Minor BPS
46.4
-0.2
1.8
62.85
41.1

Associated Gene:

Gene:
NOC3L
Ensembl Gene ID:
ENSAPLG00000012432
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012978
19999737 - 20015261
15525