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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20022207_20023711_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20022207 - 20023711
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
FSTAQDVIQQAARDDKRKGI
Intron Amino Acid Position:
1721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
41.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
39.1
-1.2
3
52.1
44.7
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042921
20021994 - 20076428
54435