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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20023546_20023711_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20023546 - 20023711
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAGC
5'SS Class:
major
3'SS Sequence:
TGCTTTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
CTGCTTTTAAAT
Flanking Amino Acid:
FSTAQDVIQQTLCKAKYSYS
Intron Amino Acid Position:
1715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
41.5
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
68.7
0.42
1
66.3
38.7
Minor 5ss
39.1
-1.2
3
52.1
44.7
Minor BPS
58.2
0.34
1.4
69.73
41.5

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046498
20021994 - 20076428
54435
ENSAPLT00000013882
20021994 - 20097647
75654