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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20023874_20025256_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20023874 - 20025256
Intron Length:
1383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
AGTAGTTGAATT
Flanking Amino Acid:
GRIIFKTREENLNERNVFQE
Intron Amino Acid Position:
1661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
87.4
0.84
0.6
86.4
20.3
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
47.5
-0.1
1.8
64.7
39.9

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046498
20021994 - 20076428
54435
ENSAPLT00000042921
20021994 - 20076428
54435
ENSAPLT00000013882
20021994 - 20097647
75654