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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20026339_20027513_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20026339 - 20027513
Intron Length:
1175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
ATTGTCTGAACA
Flanking Amino Acid:
ESPSGNTASMLFSTGERKAS
Intron Amino Acid Position:
1548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
85.5
30.7
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
67.2
0.39
1.1
62.6
42.6
Minor 5ss
41.9
-0.9
2.9
57.4
41.1
Minor BPS
64.8
0.46
1.5
74.27
37.2

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046498
20021994 - 20076428
54435
ENSAPLT00000042921
20021994 - 20076428
54435
ENSAPLT00000013882
20021994 - 20097647
75654