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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20028632_20029542_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20028632 - 20029542
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TCCTTGGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
ACTCCACTAATT
Flanking Amino Acid:
NKEPAIYSLTIVSGQNVCPS
Intron Amino Acid Position:
1423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
71.7
0.49
0.9
69.2
37
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
49.4
0.04
1.9
70.09
40.6

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013882
20021994 - 20097647
75654
ENSAPLT00000046498
20021994 - 20076428
54435
ENSAPLT00000042921
20021994 - 20076428
54435