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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20030831_20032051_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20030831 - 20032051
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTGTTTATTT
Flanking Amino Acid:
SATLAKASGKGPFDVMRQTW
Intron Amino Acid Position:
1271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.1
32.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.6
0.8
0.8
77.1
41.6
Minor 5ss
39.7
-1.2
3.4
55.3
48.9
Minor BPS
54.5
0.22
2
76.04
41.4

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042921
20021994 - 20076428
54435
ENSAPLT00000013882
20021994 - 20097647
75654
ENSAPLT00000046498
20021994 - 20076428
54435