Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20032184_20036860_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20032184 - 20036860

Intron Length:

4677

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTTATGGGAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTTATTTTACAT

Flanking Amino Acid:

VIYCQAVKFPGLSTLNPSGS

Intron Amino Acid Position:

1227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.1

1.13

0.6

93.5

20.3

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

62.9

0.29

1.2

46.3

Minor 5ss

38.4

-1.3

2.8

52.3

44.3

Minor BPS

56.1

0.27

1.7

77.18

39.4

Associated Gene:

Gene:

PLCE1

Ensembl Gene ID:

ENSAPLG00000013314

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046498

20021994 - 20076428

54435

ENSAPLT00000042921

20021994 - 20076428

54435

ENSAPLT00000013882

20021994 - 20097647

75654