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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20037785_20038550_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20037785 - 20038550
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGCC
5'SS Class:
major
3'SS Sequence:
CATTAATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTCCATTAATT
Flanking Amino Acid:
NASPAPNSQEDNILEDRPEN
Intron Amino Acid Position:
1146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.2
35.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74
0.54
0.9
70.6
39.5
Minor 5ss
29.8
-2.3
3.6
41.8
45.1
Minor BPS
70.6
0.72
1.5
85.57
33.8

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013882
20021994 - 20097647
75654