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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20041505_20042502_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20041505 - 20042502
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTTC
5'SS Class:
major
3'SS Sequence:
TCTGTTGTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCCAGTAATT
Flanking Amino Acid:
QTPVDILKQKAHQLAHMQAQ
Intron Amino Acid Position:
1091

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
67.4
38.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
68.8
0.42
1
69.2
41.8
Minor 5ss
39.6
-1.2
3.6
58.4
46.5
Minor BPS
55.3
0.24
2.2
82.74
38.4

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046498
20021994 - 20076428
54435
ENSAPLT00000042921
20021994 - 20076428
54435
ENSAPLT00000013882
20021994 - 20097647
75654