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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20042662_20042742_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20042662 - 20042742
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGACTGT
5'SS Class:
major
3'SS Sequence:
CTTGATGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTTCATAATA
Flanking Amino Acid:
QQRKMAEIFKNVFGDKLVTK
Intron Amino Acid Position:
1038

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
63
44.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.7
0.6
1
72.8
41.9
Minor 5ss
43.5
-0.7
3.3
64.5
46.9
Minor BPS
66.5
0.51
1.6
75.53
36.2

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046498
20021994 - 20076428
54435
ENSAPLT00000042921
20021994 - 20076428
54435
ENSAPLT00000013882
20021994 - 20097647
75654