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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20042860_20043301_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20042860 - 20043301
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAG
5'SS Class:
strong_major
3'SS Sequence:
TTCATTCTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCAATGACC
Flanking Amino Acid:
HTLTTKISFKEVVEAIDRNA
Intron Amino Acid Position:
999

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.2
0.61
0.8
73.2
31.5
Minor 5ss
49.3
-0
2.5
63.6
48.1
Minor BPS
55.4
0.15
2
72.27
38.8

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046498
20021994 - 20076428
54435
ENSAPLT00000042921
20021994 - 20076428
54435
ENSAPLT00000013882
20021994 - 20097647
75654