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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20045384_20045528_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20045384 - 20045528
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
ATTTTTGGAAAT
Flanking Amino Acid:
QGLLSFEGFARFLMDKDNFA
Intron Amino Acid Position:
907

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
88.9
24.6
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
74.2
0.55
0.8
71
34.2
Minor 5ss
37.5
-1.4
2.8
51.2
45.3
Minor BPS
47.3
-0.1
2.1
71.88
39.1

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046498
20021994 - 20076428
54435
ENSAPLT00000042921
20021994 - 20076428
54435
ENSAPLT00000013882
20021994 - 20097647
75654