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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20045591_20046566_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20045591 - 20046566
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TTCCTCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTATATATCT
Flanking Amino Acid:
QANVFTTDYSKFEPSVNMCQ
Intron Amino Acid Position:
887

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
69.5
41.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.8
0.71
0.7
77.3
24.7
Minor 5ss
39.2
-1.2
3.4
59.1
45.3
Minor BPS
49.4
0.03
2
75.29
41

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013882
20021994 - 20097647
75654