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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20046594_20046706_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20046594 - 20046706
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CATCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCTTTGTCATCT
Flanking Amino Acid:
TYDEILSIIQANVFTTDYSK
Intron Amino Acid Position:
878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
88.2
26.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80.9
0.7
0.8
77.3
31
Minor 5ss
33.8
-1.9
2.6
42.8
44.1
Minor BPS
46.2
-0.2
2.4
71.23
45.9

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013882
20021994 - 20097647
75654