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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20048071_20048155_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20048071 - 20048155
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AAATTTTCAACT
Flanking Amino Acid:
VEFVELFKSFSVRSRKDLKD
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.6
0.8
0.8
80.4
30.8
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
60.1
0.4
1.5
72.51
38.1

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013882
20021994 - 20097647
75654
ENSAPLT00000046498
20021994 - 20076428
54435
ENSAPLT00000042921
20021994 - 20076428
54435