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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20053056_20053453_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20053056 - 20053453
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATACA
5'SS Class:
major
3'SS Sequence:
GTTTTCTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GTTTTCTCCATA
Flanking Amino Acid:
PQDIDEQEESDQSIIINASP
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
74
36.5
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
78
0.63
0.8
73.3
31.8
Minor 5ss
34
-1.8
3
43
44
Minor BPS
50.6
0.01
1.9
67.75
39.1

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046498
20021994 - 20076428
54435
ENSAPLT00000042921
20021994 - 20076428
54435
ENSAPLT00000013882
20021994 - 20097647
75654