About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20055926_20057541_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20055926 - 20057541
Intron Length:
1616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TGTTCACACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GTTCACATAAAT
Flanking Amino Acid:
VKKASDSNQVLFIIGDLSDS
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
72.1
40.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
69.1
0.43
1
62.6
37.9
Minor 5ss
46.7
-0.3
2.8
68.2
42.5
Minor BPS
50.5
0.09
1.9
74.5
40.9

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042921
20021994 - 20076428
54435
ENSAPLT00000013882
20021994 - 20097647
75654
ENSAPLT00000046498
20021994 - 20076428
54435