Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20060166_20060865_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20060166 - 20060865

Intron Length:

700

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTCAG

5'SS Class:

strong_major

3'SS Sequence:

TAGACATCTTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

ATTGTTACAATA

Flanking Amino Acid:

RYNSQEETLEFVSDYSGQDN

Intron Amino Acid Position:

248

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.8

77.9

38.6

Major BPS

76.8

0.67

0.9

75.9

Major PPT

64.2

0.32

59.9

41.4

Minor 5ss

33.6

-1.9

2.9

40.4

45.7

Minor BPS

45.4

-0.3

1.8

58.02

Associated Gene:

Gene:

PLCE1

Ensembl Gene ID:

ENSAPLG00000013314

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046498

20021994 - 20076428

54435

ENSAPLT00000042921

20021994 - 20076428

54435

ENSAPLT00000013882

20021994 - 20097647

75654