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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20063089_20076005_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20063089 - 20076005
Intron Length:
12917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTACAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
VEDLVTRFNEVSSWVTWLIL
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
74.4
36
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.1
0.5
1.1
72.8
41.3
Minor 5ss
32.2
-2
3
40.3
45.3
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
PLCE1
Ensembl Gene ID:
ENSAPLG00000013314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046498
20021994 - 20076428
54435
ENSAPLT00000042921
20021994 - 20076428
54435
ENSAPLT00000013882
20021994 - 20097647
75654