Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2018319_2025402_R

Intron Information:

Intron Rank:

143215

Intron Class:

major

Intron Phase:

Intron Coordinates:

2018319 - 2025402

Intron Length:

7084

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

CTGAATCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTGTGCTGAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

35.3

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

68.6

0.42

61.6

39.5

Minor 5ss

37.8

-1.4

2.7

46.1

Minor BPS

58.4

0.24

1.9

70.97

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024393

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041583

1996806 - 2025480

28675

ENSAPLT00000028744

2014613 - 2025480

10868