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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20201463_20205172_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20201463 - 20205172
Intron Length:
3710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
TTATCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCAGTACTAACC
Flanking Amino Acid:
SPWPRCCGAPGTKKKAACPG
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
60.8
45.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.1
0.72
0.9
76.9
37
Minor 5ss
26.7
-2.7
3
31.4
42.5
Minor BPS
45.6
-0.3
2
56.54
41.8

Associated Gene:

Gene:
SLC35G1
Ensembl Gene ID:
ENSAPLG00000013753
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014320
20200010 - 20205452
5443