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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20222841_20222921_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20222841 - 20222921
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAACA
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTGTCTTTTACT
Flanking Amino Acid:
VMFRNYDNITGTSTVVCKPI
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
69.4
34.6
Major BPS
74.2
0.6
1
67
39.4
Major PPT
91.1
0.92
0.6
87.8
22.4
Minor 5ss
39.2
-1.2
2.9
50
46
Minor BPS
73.5
0.82
1.6
87.77
37.8

Associated Gene:

Gene:
LGI1
Ensembl Gene ID:
ENSAPLG00000013787
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037153
20222023 - 20252606
30584
ENSAPLT00000014396
20222023 - 20252606
30584
ENSAPLT00000040489
20222023 - 20252606
30584