About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20223087_20223503_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20223087 - 20223503
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
TGCACTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATCTCTGTAATT
Flanking Amino Acid:
SPKEFDCIITEFEVYQSLPY
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
78.7
0.65
0.9
72.5
37.5
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
59.5
0.38
2
77.48
40

Associated Gene:

Gene:
LGI1
Ensembl Gene ID:
ENSAPLG00000013787
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037153
20222023 - 20252606
30584
ENSAPLT00000014396
20222023 - 20252606
30584
ENSAPLT00000040489
20222023 - 20252606
30584