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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20223674_20228906_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20223674 - 20228906
Intron Length:
5233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTATTTGTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTATCTTCAATG
Flanking Amino Acid:
TFRGLKSLIHLDLRGNAFNC
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
81.2
0.7
0.9
77.4
36.7
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
64.5
0.32
1.6
68.4
39.5

Associated Gene:

Gene:
LGI1
Ensembl Gene ID:
ENSAPLG00000013787
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037153
20222023 - 20252606
30584