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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20255582_20257977_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20255582 - 20257977
Intron Length:
2396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAG
5'SS Class:
major
3'SS Sequence:
CCCTTATCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCTCCCTTATCT
Flanking Amino Acid:
NGEKSVQKTKSTKEESLLVK
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
74.6
0.55
0.8
69.5
30
Minor 5ss
36.1
-1.6
3.2
46.5
48.8
Minor BPS
71.7
0.76
1.6
85.49
40.8

Associated Gene:

Gene:
FRA10AC1
Ensembl Gene ID:
ENSAPLG00000013980
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024652
20251953 - 20276249
24297
ENSAPLT00000014586
20251953 - 20276249
24297