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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20258200_20258552_F

Intron Information:

Intron Rank:
4
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
20258200 - 20258552
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
TTGCATTATTCAG|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GAATCCTTAATT
Flanking Amino Acid:
RRFHLISMDAYERHKKFVSD
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.2
-0
1.3
50.1
41.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76
0.59
1
73.8
40.5
Minor 5ss
95.2
1.52
0.7
94.3
17.7
Minor BPS
79.2
0.99
1.1
83.35
37.1

Associated Gene:

Gene:
FRA10AC1
Ensembl Gene ID:
ENSAPLG00000013980
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024652
20251953 - 20276249
24297
ENSAPLT00000014586
20251953 - 20276249
24297