About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20258630_20259284_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20258630 - 20259284
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
CATTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
CATTCTTTTACA
Flanking Amino Acid:
GGKREDFRRSGENDKTDLDI
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.5
37.3
Major BPS
79.4
0.73
1
80.1
32
Major PPT
85.6
0.8
0.8
79.7
32
Minor 5ss
34.3
-1.8
2.9
37.3
39.7
Minor BPS
65.5
0.48
1.6
71.96
40.5

Associated Gene:

Gene:
FRA10AC1
Ensembl Gene ID:
ENSAPLG00000013980
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024652
20251953 - 20276249
24297
ENSAPLT00000014586
20251953 - 20276249
24297