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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20270434_20271061_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20270434 - 20271061
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTA
5'SS Class:
major
3'SS Sequence:
TGTTCCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAT
Flanking Amino Acid:
KKKSKKKTHKDEVSSEDSDN
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
77.6
33.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.5
0.71
0.8
73.8
36.8
Minor 5ss
42.1
-0.9
3.2
58.2
46.4
Minor BPS
74.5
0.85
1.2
85.98
33.4

Associated Gene:

Gene:
FRA10AC1
Ensembl Gene ID:
ENSAPLG00000013980
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014586
20251953 - 20276249
24297
ENSAPLT00000024652
20251953 - 20276249
24297