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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20272545_20276001_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20272545 - 20276001
Intron Length:
3457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTTAGTTCA
5'SS Class:
major
3'SS Sequence:
TCTTTTACTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTCTTTTACT
Flanking Amino Acid:
GPLQETDEKSRENYFQQTAS
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
70.1
36.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.7
0.8
0.8
78.1
35
Minor 5ss
37.3
-1.4
2.6
44.5
42.8
Minor BPS
74.6
0.85
1.5
88.94
35.5

Associated Gene:

Gene:
FRA10AC1
Ensembl Gene ID:
ENSAPLG00000013980
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024652
20251953 - 20276249
24297