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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20280465_20281514_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20280465 - 20281514
Intron Length:
1050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTACT
5'SS Class:
major
3'SS Sequence:
TTATGATTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTTCCATTGAAT
Flanking Amino Acid:
ITKPWEVQSKVALMVANEFW
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
78.2
36.3
Major BPS
84.6
0.86
1
74
41.2
Major PPT
76.7
0.6
0.9
73.9
40.5
Minor 5ss
38.7
-1.3
3.1
52.2
38.6
Minor BPS
62.1
0.46
1.8
83.73
36.3

Associated Gene:

Gene:
PDE6C
Ensembl Gene ID:
ENSAPLG00000014049
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014789
20276152 - 20304910
28759