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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20283174_20285772_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20283174 - 20285772
Intron Length:
2599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCATCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
AATTCGTAAACT
Flanking Amino Acid:
EYSKTLLQDESLNIFQNLNK
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.6
0.73
0.8
76.7
31.5
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
55.9
0.26
2.3
79.53
42.4

Associated Gene:

Gene:
PDE6C
Ensembl Gene ID:
ENSAPLG00000014049
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014789
20276152 - 20304910
28759