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Intron Name: Anas_platyrhynchos_platyrhynchos_6_20288816_20288904_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20288816 - 20288904

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAATACTG

5'SS Class:

major

3'SS Sequence:

TTTTCTTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACACAC

U12 Branch Point Sequence:

TTTTCTTTTACA

Flanking Amino Acid:

VGQTMFTLLMTGRIKKYYTD

Intron Amino Acid Position:

580

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.1

43.4

Major BPS

0.25

66.9

29.8

Major PPT

95.6

1.03

0.5

91.4

20.1

Minor 5ss

35.8

-1.6

3.2

45.5

43.5

Minor BPS

77.6

0.86

1.5

87.29

30.4

Associated Gene:

Gene:

PDE6C

Ensembl Gene ID:

ENSAPLG00000014049

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014789

20276152 - 20304910

28759