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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20289539_20292164_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20289539 - 20292164
Intron Length:
2626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTTCCCTAACA
Flanking Amino Acid:
CDEKDLIRILKEELPDPKDL
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.4
0.64
0.8
73.7
29.8
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
74.7
0.77
1.7
84.22
35.9

Associated Gene:

Gene:
PDE6C
Ensembl Gene ID:
ENSAPLG00000014049
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014789
20276152 - 20304910
28759