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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20292234_20292316_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20292234 - 20292316
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTTTTCATT
Flanking Amino Acid:
ATPSEVESILKYKEKLNVKS
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
80.1
28.4
Major BPS
100
1.24
0.5
100
0
Major PPT
87
0.83
0.7
85.9
27.3
Minor 5ss
39.5
-1.2
2.9
49.4
41.4
Minor BPS
55.2
0.24
1.7
71.31
40.8

Associated Gene:

Gene:
PDE6C
Ensembl Gene ID:
ENSAPLG00000014049
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014789
20276152 - 20304910
28759