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Intron Name: Anas_platyrhynchos_platyrhynchos_6_20292461_20293283_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20292461 - 20293283

Intron Length:

823

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGCTTA

5'SS Class:

strong_major

3'SS Sequence:

GGCTTTGTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

ATGTTGTCATTT

Flanking Amino Acid:

FDEYDEQIIETLTQFLGWSV

Intron Amino Acid Position:

424

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

77.8

33.2

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

70.1

0.45

61.4

44.6

Minor 5ss

49.1

-0.1

2.8

64.7

Minor BPS

42.5

-0.4

2.3

61.59

43.1

Associated Gene:

Gene:

PDE6C

Ensembl Gene ID:

ENSAPLG00000014049

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014789

20276152 - 20304910

28759