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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20293434_20293623_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20293434 - 20293623
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCA
5'SS Class:
strong_major
3'SS Sequence:
GGCTTTCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGAAAT
U12 Branch Point Sequence:
TATGCAGTATTT
Flanking Amino Acid:
APADEYFTFQKGPVDETGWV
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
73.5
37.2
Major BPS
50.6
0.02
1.1
57
36.4
Major PPT
76.1
0.59
0.9
68.9
37.3
Minor 5ss
34.6
-1.8
2.8
42.9
43.8
Minor BPS
42.9
-0.4
2.4
65.93
44.9

Associated Gene:

Gene:
PDE6C
Ensembl Gene ID:
ENSAPLG00000014049
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014789
20276152 - 20304910
28759